Basic Information
VIS ID
TVIS42000585
Fusion event
EBV-TTC27 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
37327
Orient
-
Integrated sequence
GCCAGAGCCGGGGACAGAGCAGGGGGAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAAGGGCAAGTCCAGGGACAAGCAACGCAAGCCCGGTGGACCTTG| |GAGACCAGAGCCAAACACCTCCAGTCCTAGCATGCCTGAACTAAGTCCAGTCCTCGGTCTTCATCAGGGACAAGGGGCTGGGGACTCACCAACTCCTGGC
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
32918162/32693095 (Hg38)
End
32918162/32693095 (Hg38)
Orient
+
Location type
Intronic
Target gene
TTC27
Nearest miRNA
hsa-mir-1301/Upstream/57764; hsa-mir-10b/Downstream/725421;
Nearest TSS
ENST00000437798/Upstream/14217; ENST00000433416/Downstream/43690;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/64892, chr2-CpG: 164/Downstream/253286
Upstream sequence
AATCCAGTAAGTTATTTTTTGTAGATTAGGCATATCATTAGGGAAGGTAATAATTTAGTACACGTAATGTTCATGGAGCTATTAGCTCACACCCTGTGGC
Downstream sequence
ctacataattaatacaatccttaagaaagtcccagaactttaaatttgttgtttttattgtttctgttgttttttcgtgaagctaaaactgactttgaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate