Basic Information
VIS ID
TVIS42000586
Fusion event
EBV-LINC00486 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148870
Orient
+
Integrated sequence
TAAATTGTAAATGCTGCAGTAGTAGGGATCTGGACGCGCGACCTGCTACTCTTCGGAAACGCCAACCCAGGAGCGTCGCCTCTGGCCCCATACTCCCGCC| |ATGCGACTGCTCGCCCCCTCCCAGGCCTCCCTGGTGAGCCCTTGCCGCTCCCCGCATTCCTGCTTTCGGCGCCCCTGCGGATCCCGATGACAGCAGGCCT
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
33141615/32916548 (Hg38)
End
33141615/32916548 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00486
Nearest miRNA
hsa-mir-1301/Upstream/281217; hsa-mir-10b/Downstream/501968;
Nearest TSS
ENST00000437798/Upstream/33747; ENST00000440786/Downstream/10579;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/288345, chr2-CpG: 164/Downstream/29833
Upstream sequence
TTTGGGGTACATCAAGATAAGTTGAGGGTCAAGTTAATGTCATGCCACAATCAACCCTGTATGTCAGGGCCCTTGAGAGCAGAGTAGTGTCGGGAGAGTG
Downstream sequence
ggggggggagggggggggggggggggggggggcgggggcggggggggggagggggggggggggggggggggggggggNNNNNNNNNNNNNNNNNNNNNNN
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate