Basic Information
VIS ID
TVIS42000588
Fusion event
EBV-LINC01317 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79221
Orient
+
Integrated sequence
CGTTGATGTGAGAATTCCGCCGCTGGGAACATGGCTCTCGTATCCACTGCAGGTGATGTTAAATTTGTTGTCTCCGGGCAGAACTTGTGAAATTTCGCCA| |TCCTCCATAATACACTCAATATCTATCTCATTACCGAGCATTTCTGTTTTTACGCTGAAATTCGAGTCTTGAGCTGACGTTGGCAAACTTAAGGGTAGCG
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
34385254/34160187 (Hg38)
End
34385254/34160187 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01317
Nearest miRNA
hsa-mir-1301/Upstream/741623; hsa-mir-10b/Downstream/1311218;
Nearest TSS
ENST00000437798/Upstream/92961; ENST00000422558/Downstream/223601;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/432570, chr2-CpG: 191/Downstream/2195067
Upstream sequence
GAAGAGTTAGGAAACATCAAAGAAGGGAAATGGAATTTACTGAAATAAATACTTTCCCCTCTTTACCCCTTACACTTTCTGGGTGGGTAGGAAGGGAGAA
Downstream sequence
aGCCATCACGCAGTTAAATAAAATTTACATGTAAAATAGCAAATTTAAAATCAGAAACCAGGTTATCAGTAAACAAGAGTAGAAGAGCAGAAGAGAATCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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