Basic Information
VIS ID
TVIS42000593
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
121186
Orient
+
Integrated sequence
TTCAATTATATAGTGTCCGTAATGGATGGGGGCGTGGGTCTGTTTGACAGACATAAACTCATCGATGAGTGCCCGGGAGGAGGCTGAGAGTGCGGGGAAT| |GCCTCCTGCAGAAAGCTGCAGGGCTGCTCCAGAAACACGTCAGTGCCAGCAATCACTACAAACTGCACCTCTGTGTTGCTGGTGGCTGGGTGCCCTCCAA
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
75836390/75609264 (Hg38)
End
75836390/75609264 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/518350; hsa-mir-10b/Downstream/4040030;
Nearest TSS
ENST00000437798/Upstream/39542; ENST00000493686/Downstream/37519;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/48078, chr2-CpG: 48/Downstream/37591
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Downstream sequence
cgccaccgtgtggcggcgccgggcagcggcagACAGCGCATCCCGGTTCTCACACACACCTGGACCTTCTAAGACAGGTGAGTCTCGAGGAGATGCTGGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate