Basic Information
VIS ID
TVIS42000594
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
156018
Orient
+
Integrated sequence
CACATGGCACCACATACCCCTGTTTATCCGATGGAATGACGGCGCATTTCTCGTGCGTGTACACCGTCTCGAGTATGTCGTAGACATGGAAGTCCAGAGG| |GCTTCCGTGGGTGTCTGCCTCCGGCCTTGCCGTGCCCTCTTGGGCACGCTGGCGCCACCACATGCCCTTTCCATCCTCGTCACCCCCCACCACCGTCAGG
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
75863082/75635956 (Hg38)
End
75863082/75635956 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/545042; hsa-mir-10b/Downstream/4013338;
Nearest TSS
ENST00000437798/Upstream/66234; ENST00000493686/Downstream/10827;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/74770, chr2-CpG: 48/Downstream/10899
Upstream sequence
TATTAATTATACCCCTTAAAATATGTATTTAGTCAAATAAATTTCTCTAAAGACTGGGATAAGAACTTTTTATTATTGAATAACTATGAATACCAAAAAT
Downstream sequence
AGATTCTCTTGGTAGCCATGATTAAAAAGCACTGATACGTTTCTCTAAACAAAAGACAAAAAATGGGATTCTAAGTCATTATATTTAATACTTCATTTCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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