Basic Information
VIS ID
TVIS42000598
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
97986
Orient
-
Integrated sequence
AGCTGGTCATCAGCCGCTGCGCAAACGGACTCAACGTGGTCTCCTTCTTTATCTCCATCCTGAAGCGAAGCAGCTCCGCCCTCACGGGCCATCTCCGTGA| |GTTGTTAACCACCCTGGAGACTCTTTACGGTTCATTCTCAGTGGAAGACCTGTTTGGTGCCAACTTAAACAGATACGCATGGCATCGCGGGGGCTAGACC
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
84128510/83901386 (Hg38)
End
84128510/83901386 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2L
Nearest miRNA
hsa-mir-1285-2/Upstream/4034803; hsa-mir-10b/Downstream/1882214;
Nearest TSS
ENST00000437798/Upstream/378572; ENST00000440495/Downstream/413722;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2433829, chr2-CpG: 27/Downstream/389204
Upstream sequence
aaaacataattaagataaattaatgaagatgtaaataaacggagtgatacgtcttgttcgtgacttcatgttttaaaatttcaagtctttccaaattaac
Downstream sequence
aaggagaaaggacctgtggcagatgcaccagattttatagtcaggtttgaggaggcgatgtctaatttacatagggctcacagattggttcaatcaggta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate