Basic Information
VIS ID
TVIS42000600
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
151057
Orient
-
Integrated sequence
ACATCCCCTCGGCCCGCGGACGCCGCCTCGCCAGCCCCCGGGCCTTCATGGGCCCGCTTTCTACCTCTCTCCGGCACCCCAGCCTGGTCAGCCGCAGAGG| |AAGCATGACCTTGGGGTGGGACGGGGCAGGCGTGATCCTGGGCGCAATCTTTGCCGATCCCCACACCTTCACTCCTTGTTAGGTTGATAGAATGTCGGTA
Host Sequence
Chromosome
chr2
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
91771825/91583766 (Hg38)
End
91771825/91583766 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/2771312; hsa-mir-10b/Downstream/5214512;
Nearest TSS
ENST00000437798/Upstream/3430; ENST00000514060/Downstream/234005;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/104307, chr2-CpG: 99/Downstream/4992
Nearby gene
LOC101926969(-2903) ; LOC388996(+5698) ;
Upstream sequence
GGAGCTTGCTTTTAATTAAGGGAAATAAAATTGGTTCTTGCTTGTGAGTGGTGTAGAGGGTGCGTGGTGGTGGTGGGCAGAGGGCAGGAGGACCCTGGGT
Downstream sequence
ccacaacctctgcctcctgggttcaagtgattatcctgcctcagcctcctgagtagttgggattacaggcatttttagtagagaaggggtttctccatgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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