Basic Information
VIS ID
TVIS42000601
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
152114
Orient
+
Integrated sequence
GATGATGATAACTGTGAGGAGGACGATCAGGACTGCCGCCAGTAGGTAGCAGCCGGCTTTCAGTCCTTGGACGGCCGTGTGCATGCCTTTGGTGGGGCCT| |TCCCTGCACATGTTGGGGCCTCTGTTGAGATTGGCGTCGGGGCCCATGGTAATGAGGAGGATGATAATCAGCAGGAGTACCAGACAAAACACGCCCATCA
Host Sequence
Chromosome
chr2
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
95357348/94691622 (Hg38)
End
95357348/94691622 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/5879168; hsa-mir-10b/Downstream/2106656;
Nearest TSS
ENST00000437798/Upstream/103100; ENST00000468063/Downstream/126179;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/417942, chr2-CpG: 33/Downstream/44013
Upstream sequence
TTTGTAAGACCATTTCATTTCTGGGAATGAGGCCAAATGGGCCTTGTGATTTTTCTTTTGTAGACTAGCTGtttaaaaaaaaatttaaaaaatatattaa
Downstream sequence
ataaaatctatatctagctcaaaccccttactctcgctctctcatacaaatcatcggacaaaatgatgtgctcttttgctggcataaatattatttTAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate