VISDB Viral Integration Site DataBase

VIS ID

TVIS42000602

Fusion event

EBV-MGAT4A integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

74888

Orient

-

Integrated sequence

CAGGTGGGAGATTTGCTAAGAAATGAGCAGACGATGGGCTCACTGAGACAGGTTTATTTGCTCGCTGTTCAAGCCAATAGCATCACGGATCACCTGAAGC| |GCTTTGACGCCGTCCGCGTCCCTGAGAGCTGTCGTGGGGTGGTGGAGGCCCAGGTGGCCAAGCTTGAGGCCGTGCGCTCAGTCATCTGGAATACCATGAT

Chromosome

chr2

Cytoband

q11.2

Reference genome

Start

End

99331742/98715279 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA2S ; FRA2A

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-409-3p ; hsa-mir-376a-5p ; hsa-mir-4423-3p ; hsa-mir-376a-2-5p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-564 ; hsa-mir-3622a-5p ; hsa-mir-5582-5p

Nearest miRNA

hsa-mir-1285-2/Upstream/1916926; hsa-mir-10b/Downstream/2594171;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/106420, chr2-CpG: 150/Downstream/15140

Upstream sequence

gcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcaagactccgtctcaaaa

Downstream sequence

tgcgttccagcctgggtgacagagctagacttcatctcaaaaaaaaaaaaaaaaaaaaaagaaatgagggagaagagacatctcttccttacagtggaat