Basic Information
VIS ID
TVIS42000603
Fusion event
EBV-KIAA1211L integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
119725
Orient
+
Integrated sequence
ACCTCGCTCTTCATCCAGGAGGGGGCCATGGCTGCCATTCTACCAGTTAACGAGGAGAGAGAGAGTAGGTCCGCGGAAATTGGTGCCCCTCTCTGCCCTC| |CTGACGAGGCCATGGTGTCATCCATCTCCGCAGTCCGTTCTTCAGCTTTGGCATTGGTCCGGGTCCGGGTGGTCTGATTTTGATTCTGATCCTGGGTATT
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
99526404/98909941 (Hg38)
End
99526404/98909941 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2A
Target gene
KIAA1211L
Nearest miRNA
hsa-mir-1285-2/Upstream/2111588; hsa-mir-10b/Downstream/2399509;
Nearest TSS
ENST00000437798/Upstream/1420; ENST00000496794/Downstream/26233;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/86520, chr2-CpG: 169/Downstream/25781
Upstream sequence
AATGATCCATAATAATGTTTAGAATAGGTAGTATGtcatgcctgtaatcccagcactttgggaggtggagtggggggaatcatttgaggccaggattttg
Downstream sequence
TGAAGCAGGAAATGGCTGCATTTTGCCCCGATTCCCACCCCTCCGGATTAGTACATCATGAGTAGTCAGTAACGCCATCTCTCCCACATCGCACTTTCCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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