Basic Information
VIS ID
TVIS42000605
Fusion event
EBV-LINC01854 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
76503
Orient
+
Integrated sequence
AGTTCTACTCCTACACATGTAATGCGGACACATTCTCGCCTTCTTTGACCAGCTTTGCCTCCATCTGGGCACTTCTGACGCTTGTCTTAGTCATTATAGC| |CTCAGCCATCTACCTGATGTACGTCTGCTTTAACAAGTTTGTGAACACGCTGCTGACGGATTAGATGGGGATATTTAAAAGGGGCAGCAATCTCGGCTGT
Host Sequence
Chromosome
chr2
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
130001615/129244042 (Hg38)
End
130001615/129244042 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LINC01854
Nearest miRNA
hsa-mir-1285-2/Upstream/1820424; hsa-mir-10b/Downstream/2247118;
Nearest TSS
ENST00000437798/Upstream/172317; ENST00000450840/Downstream/29806;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/341669, chr2-CpG: 37/Downstream/343428
Upstream sequence
CTGTGAAGAGTGGGGAACCTGCTGAGACTTGTTCTTGGGAATTGAGCTATAGACTAGAAGATTGTGCAGTAAACAAGAAGAAAGATCACCAAGATCGTGA
Downstream sequence
TGAAGCATATATTTTGTTAGTTCTTTCAGTCTTTGAGTGGTTAACTTAGCCTTTGCTCAGAAACATCTTTATTTGAATAACCTTCAGTTCTCATGCTCAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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