Basic Information
VIS ID
TVIS42000607
Fusion event
EBV-LOC105373645 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
146086
Orient
+
Integrated sequence
TTAAAGCCTTGTATCGGAAGTTTGGGCTTCGTCCCAGTGTACTCGATAATGTCGACTGCTGCGAAAGGTTTGGACCGTCTTCCAGTAGGTGTTGGGGGTC| |CCAAATCACGAGGTTAGGCAGGTGCACTTGGCTCTTTAGGAGGGACCCTTAAGCCAGACAATGTAGTGCCCCTTTTTTTTGCAAATTGGCCTTATTATTA
Host Sequence
Chromosome
chr2
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
140197745/139440175 (Hg38)
End
140197745/139440175 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373645
Nearest miRNA
hsa-mir-128-1/Upstream/3774697; hsa-mir-10b/Downstream/1146451;
Nearest TSS
ENST00000437798/Upstream/74010; ENST00000421326/Downstream/29600;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/659095, chr2-CpG: 58/Downstream/2689980
Upstream sequence
CAGCTCCTTCAATTTTGTGTTACTTTTATAATAGCAAATCAGTTGCTATGATTACAAAATTAGAAAATATTCTTTTCTAACAAATTGTTATTTCCTTCCA
Downstream sequence
cctttctctcttctcttATTGTCAATATTTTAAAAATTTTTTGTGTGCTGCCAGACATTTTAGTTTTAAGAGCACatagcgtagatatcagaaatataag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate