Basic Information
VIS ID
TVIS42000608
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
3682
Orient
+
Integrated sequence
AAGCATCCTGTCACACCCCACCGTGGGAAGCAAGGAGCACTTGGTCAGGCACACGGACAGGGTCAGCGGAGGACGCGTGGCACAGCAGCCCGGGGTAGGT| |CCCCTGGACCTGCCGCTGGCGGACTACGCCTTCGTTGCCCACAGTCAGGTCTGGACCAGGCCCGGTGGGGCTCCTCCCTTGCCCTATCGTACCTGGGATC
Host Sequence
Chromosome
chr2
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
140910144/140152575 (Hg38)
End
140910144/140152575 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-128-1/Upstream/4487097; hsa-mir-10b/Downstream/434051;
Nearest TSS
ENST00000437798/Upstream/20795; ENST00000410015/Downstream/145394;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1371495, chr2-CpG: 58/Downstream/1977580
Upstream sequence
CATTAATCTGGATGTTACCTGGATTCCCCTTGATATGCCACAGTTCCTCAATGCTGTTAACCTCTATTCAAGTCACTGAAATAATTTTCTTTTGATATCT
Downstream sequence
ACTTGACTATATACTACATACTATAAACTGTAATTATTACTATGAAATGAACTTCTTGTTGTAGATAATATCCCTACTTCAAATATTTATTTTCTTGGGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate