Basic Information
VIS ID
TVIS42000610
Fusion event
EBV-CACNB4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10716
Orient
+
Integrated sequence
TGACAAGGGGACAAGTGTGGCAGGTGGGCGGGAAGGGGCACAAGAATGCCGGCGAAACTGGACCACGGTCCACCCCGCCCTCAAGCGTCCGGGAGCCGGG| |CGGCTCGGCTAAGGAGGGCGGCCTTGCGAACAATTATTAGTAGCTACCAACAAGGGCCCCCAGATGCCCCCCACCAGTCACCCGGCCGTGTCCACTCACA
Host Sequence
Chromosome
chr2
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
152841929/151985415 (Hg38)
End
152841929/151985415 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
CACNB4
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-128-1/Upstream/617004; hsa-mir-10b/Downstream/7201420;
Nearest TSS
ENST00000437798/Upstream/11364; ENST00000420365/Downstream/63374;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/156798, chr2-CpG: 108/Downstream/112704
Upstream sequence
CTTGATTCAGTGCTAACCCAGCGAGGTGGTAGTTATTGCTTTGCGGAGATGAAAGGATTTTGTTATTGTTTTCTGGAATAGAAAATGAGCaaaaaaaaaa
Downstream sequence
ctgcaattcagattattttcttgggctagattcccatatattcttgggtcaaagtatatgaatgcttttaagcctcttgatcacattgccaaaggttgta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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