Basic Information
VIS ID
TVIS42000611
Fusion event
EBV-GALNT13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
52683
Orient
+
Integrated sequence
GACAGGAGGTCTCCCAAACCCCCATCTCTCGCTAGAGCCGAGACCAGGCCGAGTCCTGCGTAGAACGATGGGGCGCCCAGGAAGGCGGCAGCGTAGGCCG| |GATGTGTGCCGACCAGCAGCGCCATCATCTCCCGTTGTTCCAATAGAATAACTTCCCGGTCTGTGGCCGGGGCTGGATAAGGGGGGTGATTCCTAGAGGC
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
155099524/154243011 (Hg38)
End
155099524/154243011 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
GALNT13
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-6868-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-1237-3p ; hsa-mir-561-3p
Nearest miRNA
hsa-mir-128-1/Upstream/2874600; hsa-mir-10b/Downstream/4943824;
Nearest TSS
ENST00000437798/Upstream/102670; ENST00000487047/Downstream/14556;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/369606, chr2-CpG: 141/Downstream/454482
Upstream sequence
actttaggacatggacatacacaaagtttaggaacagaggtttaataggtagaagagaagagaaagagaaacagctctctttataaagaaaggggtctcc
Downstream sequence
ATTTTATAGCTTTTCTTAAAAGCACGTTTTCCCACTTGCTTGATAAATAAGACTGCTGTATTCATGCTGGACATAGATAGTTGATTAAGAAATAGTGAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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