VISDB Viral Integration Site DataBase

VIS ID

TVIS42000613

Fusion event

EBV-TTC21B integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

166862

Orient

+

Integrated sequence

GACCTTTTGGACATTCTTCTGAAGGAACGGCGGAGAGTAGCGTAGAATCCAGCCAGTGGTCTACCCGGTCGCATGGTGGCTTCTTAGATGAGGAGCAGGC| |ATAAAAGTCCAAACAGGACACAGAGTACCACCAGGAGTAGTCTTAGTCTGCTGACGTCTGGGTCCTCGGGGCAGGGGTGGCTAGGCCTGGTCTCCGTAGA

Chromosome

chr2

Cytoband

q24.3

Reference genome

Start

End

166788250/165931740 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-513b-5p ; hsa-mir-3165 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-3665 ; hsa-mir-6089 ; hsa-mir-1827 ; hsa-mir-383-3p ; hsa-mir-4457 ; hsa-mir-125b-2-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-624-3p ; hsa-mir-3974

Nearest miRNA

hsa-mir-128-1/Upstream/5523858; hsa-mir-10b/Downstream/2651203;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/137284, chr2-CpG: 72/Downstream/21720

Upstream sequence

ctacaggtgcacaccactgggtttagctaatttttttttttgagagagagtttcactcttgttgcccaggctggagtgcaatggtgtgatcttgtctcac

Downstream sequence

ATGGTAGGCACTCTCACAGTTCTGCTGAAGGCGAGTGTAATGTTATAGAAAAGTTGAGCATTCTGTGGTTCCATGGCATCCAATGTATTTCCCAAGTTTT