Basic Information
VIS ID
TVIS42000616
Fusion event
EBV-LOC105373744 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
129768
Orient
+
Integrated sequence
TTGACCGTGGCCATCAGCATGGCGGCCAAGCGCTCCAGCCCGTAGGATTGCATGCCCTTGACAGTGGCCCCATAACATATGCCGATGATGTCTTTCAGGA| |CAGTCAGCTCAAAGAAGCTCTTGGCCAACCAGCGGAGGTCCACGCAGCCATTGCCAGTCTCACCCACAGCATGACCCACCTTAAAGAAGGCCACAGAAAC
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
174300578/173435850 (Hg38)
End
174300578/173435850 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2G
Target gene
LOC105373744
Nearest miRNA
hsa-mir-128-1/Upstream/4852832; hsa-mir-10b/Downstream/1731783;
Nearest TSS
ENST00000437798/Upstream/77343; ENST00000604994/Downstream/375226;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/80210, chr2-CpG: 54/Downstream/527752
Upstream sequence
GTGAGAGTGGCAGAGGGCCAGCAGAGTAGCTACGGAAGCCAACAACAAAAGGAATGGGTAGCGGGGCTTGGGCCGCTTTCAAAAAGGGGAAACTTAATTC
Downstream sequence
AGATATATTCATCTTAGGAGGCTACAATGGACAAGACCGAGAGTCAAATGGATAACTCATCAATCAGATTATTGACCTTCTCTGTCACGATGTTGATGAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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