Basic Information
VIS ID
TVIS42000617
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
133745
Orient
-
Integrated sequence
TACAGGACCATGTCGGCTAATGCCATGCAGCGGCGCGTGTTCCCTAAGCAGCTGAGGGGCAACCTGAACTTTACCAACTCCGTCTCCCTAAAGCTGATGA| |CAGAAGTGGTGGCGGTGCTTGAGGGCACCACCCAGGACTTTTTCTCAGACGTCAGGCACCTGCCAGACCTCCAGGCTGCCCTGATCCTCTCGGTGGCCTA
Host Sequence
Chromosome
chr2
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
174383467/173518739 (Hg38)
End
174383467/173518739 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2G
Nearest miRNA
hsa-mir-128-1/Upstream/4935721; hsa-mir-10b/Downstream/1648894;
Nearest TSS
ENST00000437798/Upstream/160232; ENST00000604994/Downstream/292337;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/163099, chr2-CpG: 54/Downstream/444863
Upstream sequence
gggagtgcagatatctcttcaatatactgattttctctcctgtgaatatatacccagaagtggtattgcaggatcatatggtagttgtgttttcgttttt
Downstream sequence
tttctagagataaaaagaggtactttatgatgattaaggaaacagtctatcaagaaaacataaacttctataagcatgtgtccccagtaacagtttaaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate