Basic Information
VIS ID
TVIS42000621
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
91298
Orient
+
Integrated sequence
AGATTCAAATCCTCTGTCATGGACTCTAGTGTTGTGGTCAGTTCGTCCAAATGGCCACGAGGGGGCGGGTGGCTCAGGTCCATCTGTCCACATATGGCTG| |CTTCCTCCTTCTGGGGAATAACAGTGTCAGCCATCTCCCTTAGGGCCTTCACGGCCTGACTGGTTTCTTCATCAGGGTCCTCCAACAGATGACTTGCCTC
Host Sequence
Chromosome
chr2
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
191562305/190697579 (Hg38)
End
191562305/190697579 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/1564468; hsa-mir-1244-1/Downstream/16085655;
Nearest TSS
ENST00000437798/Upstream/7207; ENST00000496170/Downstream/3967;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/47866, chr2-CpG: 139/Downstream/182981
Nearby gene
NAB1(-4813) ;
Upstream sequence
ACCTATTTTCCTGAGTTTGCTTTAGAAAGGTGGTACTGAAAATACCAATTTACATCTAATGTCTGTTCATTATGCTATCTCTCAAGGCTTATAAGAATGT
Downstream sequence
tgcctcctgggcccaagcaatcctctcacctcagcctcctgaatagctgggactgcaggtgtgcgctaccatgctcagctaatatttTAAGGTTTATAAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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