Basic Information
VIS ID
TVIS42000622
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
160425
Orient
+
Integrated sequence
TCCCCTCTGCCGTGGAAGGGTTGCCGTGGTTGGGCAGAACCATCAGCTCGCCCACACAGCGCCAGCAGGGCACAGAGGTGATGTAGAGGCGCGGGTCTGG| |GATGGGACTTACGCCCCGAAAGCGGCCCAGCAGATCCAGGGCCCGTTCCAGGCTCTCCAGCCCCATGGTGTGAGACATGCAATAAAACACGCTATTGATT
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
194276139/193411414 (Hg38)
End
194276139/193411414 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4278303; hsa-mir-1244-1/Downstream/13371820;
Nearest TSS
ENST00000437798/Upstream/661447; ENST00000569293/Downstream/486953;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1215328, chr2-CpG: 150/Downstream/2245417
Upstream sequence
GCCAAGCAGAGGCGGATGTGATACAGCATAAGTCAGGGAAAACACCGAATGGAGGTGAGTCCAAACACAGCCAATAAAAGGGAACCAATGAGGAAAGACA
Downstream sequence
tgctttcataccttggctattgtgaataatgctgaaataaacataggagggaagatacttcttcaacataccaattttagttcttttgaatatatatcca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate