Basic Information
VIS ID
TVIS42000623
Fusion event
EBV-LOC105376755 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
285
Orient
+
Integrated sequence
TACTCTTGGCAGCAGTGGCCAGCTCATATGCCGCTGCACAAAGGAAACTGCTGACACCGGTGACAGTGCTTACTGCGGTTGTCACTTGTGAGTACACACG| |CACCATTTACAATGCATGATGTTCGTGAGATTGATCTGTCTCTAACAGTTCACTTCCTCTGCTTTTCTCCTCAGTCTTTGCAATTTGCCTAACATGGAGG
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
195873471/195008747 (Hg38)
End
195873471/195008747 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376755
Nearest miRNA
hsa-mir-10b/Upstream/5875636; hsa-mir-1244-1/Downstream/11774487;
Nearest TSS
ENST00000437798/Upstream/278152; ENST00000413290/Downstream/17623;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2812661, chr2-CpG: 150/Downstream/648084
Upstream sequence
aaaacataatttattacaattacaaactattgcaccatatagatgtcctatgcagttctcattgtttcactcatgtaaataatgctggaattctattagt
Downstream sequence
CATACAACAAACACATGAGTTATTCACAAGTGTGCTTCCTTTAGAATCTGTAGCAGGTTTTCAATAACTATTTAAATTATATCTCATGAACTTTAGAAAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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