Basic Information
VIS ID
TVIS42000626
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
85495
Orient
-
Integrated sequence
ACTCCCATGCAGCTGGCACTAAGGGCTCCTGCTGGTCAGCAGGGGCCGACAAAGCAAATTTTGCGCCAATTGTTAACGGGGGGCGTCAAGAAAGGGAGAC| |CATCACTTAAGTTACAGGCCGCCCTTGAGCGTCAAGCCGCTGCGGGCTGGCAGCCTTCACCAGGGTCCGGCACCAGTGACAAGATTGTGCAGGCGCCTAT
Host Sequence
Chromosome
chr2
Cytoband
q37.1
Reference genome
GRCh37/hg19
Start
232727951/231863241 (Hg38)
End
232727951/231863241 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/149843; hsa-mir-1471/Downstream/29001;
Nearest TSS
ENST00000437798/Upstream/67054; ENST00000441279/Downstream/63087;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/76520, chr2-CpG: 20/Downstream/37295
Upstream sequence
ATTTAAATACATATTTGCACTCTAGGCCATATGCTCTTCCCTGCTTCCACCTTTTCCACTTATTTTATGTCCTCTACTATAGATAACAGAGCTCTGGTAC
Downstream sequence
gagaaggagtctcgctctgtcacccaggttggagttcagtggtgcgatctcggctctctgcaacctccgcctcccaggttcaagcaattcttctgcctca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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