Basic Information
VIS ID
TVIS42000627
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
161804
Orient
+
Integrated sequence
GTACGTGGGGGTAGTCACGGGCGGGCACCGACTGCGTCCTCGGCACCAGTCCCTGAATCAGGCTGATGTAGAACTGGGTCTGGCCGCACGCCTTCAGGAT| |GGCGTTGTTGAGCCTCTGCTTGGCGTAAGTGACCAGGTTGCCAGGCACCACATCTATGACGTTGCTCTCTTCGTGGGCCCGGGAGCCCCCGTCCACAAAG
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
237987229/237078586 (Hg38)
End
237987229/237078586 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4528013; hsa-mir-149/Downstream/432345;
Nearest TSS
ENST00000437798/Upstream/22419; ENST00000419015/Downstream/6726;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/509966, chr2-CpG: 62/Downstream/7128
Nearby gene
COPS8(+6855) ;
Upstream sequence
GCCATTTTAAAAAATAttttgtctctaattgataaatagtaattatatatatttaggggatacaagttgatgttattttatatatataaaatatatatat
Downstream sequence
gcagttacctccatgctgttcttgtgatagtgagtgagttctcaaggtatctgatggtttttcttttgctgttgttttatttgtttgttttttgaggagt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate