Basic Information
VIS ID
TVIS42000628
Fusion event
EBV-chr2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
116379
Orient
+
Integrated sequence
CCAGGGCCGGGATGTGAGGCCTCAGCGCCCCCTCCTGATCAAAGAGGGCCTCGCTGACCCCGGAGATGACATTCTCATTCAGAAAGTAGTGATAGAGGTG| |ATTGACCACAGTCTTAACCAGGCCCTGGACTTGTTCAGGCTCCCACTTGTCCCGCTGGTCCTGTGTGTCTTGTCGGATCTCGGTCCAGGGCCTCAGCGCC
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
240746861/239825167 (Hg38)
End
240746861/239825167 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2J
Nearest miRNA
hsa-mir-10b/Upstream/473363; hsa-mir-149/Downstream/117848;
Nearest TSS
ENST00000437798/Upstream/62307; ENST00000426280/Downstream/151418;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/8628, chr2-CpG: 18/Downstream/80245
Upstream sequence
GTATTTCGCTCCTACATCCAGGTGTTGTACTGATCACACTTTTCTGTGTATTTGCATTGCTACAGCACTTCttttttttattattttttttttttttttt
Downstream sequence
CACATTTGAAGAAAGCTAAGGGGCCTGGGGCTAGGATGATGCATGTGCCACCCTCTTGGGCTTCAAAGTCATCTGCAGTGGTGTCTGGACTTGGGTGGAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate