Basic Information
VIS ID
TVIS42000632
Fusion event
EBV-chr20 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
98729
Orient
+
Integrated sequence
TGTGGGGTGCGAAGGCGGGAGACAAAGCTTCACTAATCAACTCCAAGAAGCATCTGGTTCTGACCTCTCAGCATCCCTCTCCCCTGGCCCAGAACAGCAC| |CCGAAAGAGTGCCCAGCAGAAGTTCCTGGGCAACAACCACTTTGTCCTCGCTAACAACTTTTTGCGTGAGAAGGGGCTCGGTGAGATAGATTGGAGGCTG
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
46072480/47443736 (Hg38)
End
46072480/47443736 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/276678; hsa-mir-1-1/Downstream/2420123;
Nearest TSS
ENST00000382410/Upstream/31409; ENST00000490248/Downstream/58166;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/204369, chr20-CpG: 56/Downstream/57948
Upstream sequence
ccacaatatgtgaaaacatgtgatgtttgtctttctatgcctggcacatttcacttagcataatgacctccagttccatccatgttgttgcaaatgacag
Downstream sequence
cgaaatcacactacactccaccctgggtgatagagtgagaccctgtctcaaaaataaattaaaaaaaaaTTAAAggcctggcacagtggctcacgcctgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate