Basic Information
VIS ID
TVIS42000634
Fusion event
EBV-chr20 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
134903
Orient
+
Integrated sequence
CTGGGCTACCTGGCCTCCCCGGTGGCCCCAAGCTGAGCCAGTTCCTCGCACTGGAGTGGGTCATTGGCAAAAAGGTAAATAAACTCATCGCACGGGGGTT| |TTGCCTCCTTCTCGTCTCTTGTTTCGGGTAGGGGAGTAAGGCCGTGCCAGGCCGCCATGCTCAGGGCCACGGCGTGCCAGAGGCCCTCGTAGTCGTGCGC
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
47724321/49107784 (Hg38)
End
47724321/49107784 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/1940726; hsa-mir-1-1/Downstream/756075;
Nearest TSS
ENST00000382410/Upstream/17021; ENST00000462328/Downstream/46284;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/60872, chr20-CpG: 83/Downstream/80032
Nearby gene
STAU1(+5555) ;
Upstream sequence
TATTTTTTAAAAATTGATTTTGCTCTTTGTAAGACACACAGAAGTATTTTAGAAGAGGAAAGACACAAGTGAAGTCCCTCTCACTCTCTGTCCCTCTCCC
Downstream sequence
aaacttagctgaaggactcataggttaagatttcaaaatttactacagtaatcaaatcagtgtggtaccagcacaacaacagacatataggaggctggtt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate