Basic Information
VIS ID
TVIS42000637
Fusion event
EBV-chr21 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
106269
Orient
-
Integrated sequence
GAATAGGTGAAAACATCCCCACGCGGTGTCCTGATGTATACGTCCAACTGTCCGGGAGACTCAGAGTGCCTCTGAGCATGGGGGCATGTCTGTTCCCCCT| |CCATCTCGGACCCGAAGCCATCAACAGGTGGGGGTTGTTGGTCCCGCCCATCATCCCCCGAGCAGCTTTGGCAGACCACCTGTGCTGGAAAGAGAGGCTG
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
16717292/15344973 (Hg38)
End
16717292/15344973 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA21A
Nearest miRNA
hsa-mir-10396a/Upstream/1620699; hsa-let-7c/Downstream/1194116;
Nearest TSS
ENST00000624081/Upstream/277903; ENST00000464435/Downstream/57332;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/279430, chr21-CpG: 123/Downstream/384561
Upstream sequence
tttgggttattattcacacatttattttcccaaactagaagtttaggagccaactttgacttcttccattttctccacacaaattcaatcagtcagtgtg
Downstream sequence
tcttgttaaatctaactctgaaatgtttttcgagtctgtcacatcttaTTCATTCTTTACAGTTTTATATATAGAAAACAAGTGGTTCTCTTAACTTTTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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