Basic Information
VIS ID
TVIS42000638
Fusion event
EBV-chr21 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
45823
Orient
+
Integrated sequence
GCTGGATGTCAATGGCAAGAATCCTGGAGGGCATGAAGAGGGAATCCAACCCCCCGGCCATGGGGAAGTATTTTATCAGGATGTGTAAAAAGTCCATGCC| |TGTGATGAGGCTAGAGATCCAGGCTCGTGGGGCATTTAGACAGTAGTAGCAGAGCAGGGCATAGTCCTCAAAGAAGGCCACGGGGGCATCTGAGTGATTG
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
21065414/19693100 (Hg38)
End
21065414/19693100 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1006936; hsa-mir-155/Downstream/3386184;
Nearest TSS
ENST00000624081/Upstream/391487; ENST00000486367/Downstream/206655;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/1447543, chr21-CpG: 89/Downstream/1304005
Upstream sequence
AATTTTCACCTAAAGTTGGACaggagatttgaagtgacttggagattgatccaggaaaaagctatgactataggaggcagtaacacatgatgagttttac
Downstream sequence
tgggaagtgcttgaacaaaattgcaagagggggtaagccccttacaatgagaaattgtccagagggttacagtgagaagatcactccagacagagcgaag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate