Basic Information
VIS ID
TVIS42000639
Fusion event
EBV-chr21 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
55858
Orient
+
Integrated sequence
CGGGGTTGTCGTGGTTGGCGGGTGTCGCAGAGGGAGAGGCGGGAGAGATGGGGGCGCCTGGGGCCGAGGCCACACCGGCCAGGCCCAACATTGCCTCGAT| |GTCGTCCAGGATGGTGCGGAGGCGCTTTTCGTTTTCTCTGGTGGTCTCGAGCTCCTTCTGTTTTTTCGCGACTGTCTCAAACTCTGGAAGGGGGGCAATG
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
21951785/20579472 (Hg38)
End
21951785/20579472 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1893308; hsa-mir-155/Downstream/2499812;
Nearest TSS
ENST00000624081/Upstream/320652; ENST00000486367/Downstream/223591;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2333915, chr21-CpG: 89/Downstream/417633
Upstream sequence
AATACTTGTTCAACATTTATTGACATTATATTAGCAACAGGTGATGTGAGAAATAAGACAGTCATAtttcttttattttttcttttttcttttcttgagt
Downstream sequence
cggagttttgctcttgtttctcagactggagtgcagtggtgggatctcagctcactgcaacctccacctcccgggttcaagagatactcctgcctcagcc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate