VISDB Viral Integration Site DataBase

VIS ID

TVIS42000644

Fusion event

EBV-MIS18A integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

68817

Orient

+

Integrated sequence

GAGAGGCCTCTGGCTGTTCAGCTCGCGAGGAAAAGGACATCGTCGGAGGCCAGGCAGAAGCAGAAGCACCCCAAGAAAGTGAAGCAGGCCTTTAACCCCC| |TCATTTAACACCATGTTCTCGTGCAAGCAGCACCTGTCCCTGGGGGCCTGTGTCTTCTGTCTCGGCCTCCTGGCCAGCACCCCCTTCATTTGGTGCTTTG

Chromosome

chr21

Cytoband

q22.11

Reference genome

Start

End

33555484/32183172 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-24-3p ; hsa-mir-505-5p ; hsa-mir-374a-5p ; hsa-mir-3192-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-452-3p ; hsa-mir-3151-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1224-3p ; hsa-mir-7156-3p ; hsa-mir-1184 ; hsa-mir-6814-5p ; hsa-mir-4714-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418

Nearest miRNA

hsa-let-7c/Upstream/1807794; hsa-mir-3197/Downstream/1367490;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/308876, chr21-CpG: 63/Downstream/95425

Upstream sequence

AGAAAAATGGATTCTGGGGCAGGAGCTGGTCCTGTCTTAGTATCTATTCCCCTGCCCATCCTGCCCCACACACTTGTACTCACACACACCAACTTCTTAG

Downstream sequence

TCCATTGAACCAATGTCATATTTCAATAAAATTATAAATTAGTGCCTATCACGGACTTCTGCTATTAACACTACAACTGTTAAATTCCTCACCATGAGGC