Basic Information
VIS ID
TVIS42000645
Fusion event
EBV-LOC100506403 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64188
Orient
-
Integrated sequence
AAGTGGTTCAGTGGACACCCACCACACAGCATGGCAACGACCAGTCATGTCGAGCATGAGCTCCTCTCCAAATTGATTGATGAGTTAAAGGTCAAGGCCA| |ACTCAGACCCCGAGGCTGATGTCCTGGCCGGGCGCCTGCTCCACCGCCTTAAGGCCGAGTCAGTTACACACACAGTAGCCGAATATCTGGAGGTCTTCTC
Host Sequence
Chromosome
chr21
Cytoband
q22.12
Reference genome
GRCh37/hg19
Start
36822228/35449930 (Hg38)
End
36822228/35449930 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100506403
Nearest miRNA
hsa-let-7c/Upstream/1899202; hsa-mir-3197/Downstream/270785;
Nearest TSS
ENST00000624081/Upstream/313292; ENST00000457157/Downstream/15399;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/422968, chr21-CpG: 42/Downstream/436963
Upstream sequence
gttataaagaaatacctgaggctgggtaatttataaagaaaagagattgtattggctcagggttctacaggccgtgcaagcatggcactggtatatgcat
Downstream sequence
ctgcctggcttctggagagggcttcagggagcttttactcacggcagaaggcaaagcaggagcaggcaagacacgtggcaaaaacaggagtaagagagag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate