Basic Information
VIS ID
TVIS42000648
Fusion event
EBV-UBASH3A integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
101030
Orient
+
Integrated sequence
GAGCCGGGTCCAGCCCACGTACTGCGCGGGGTCCATTATGGCCGCCCTGGGGACGACGAAGCGGTCGACGTAGGCCAGGATGTCCGGCGAGAGCTCGAGG| |CCGTACTCGAGGGTCTTCATGAGGTGTCCAAACTGGACGTCGGTGCAGCGCTTGTTGTTGATGAAGAGGGCCCAGTTGCGGGCCACGTCCACGTAGGTCG
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
43858402/42438292 (Hg38)
End
43858402/42438292 (Hg38)
Orient
-
Location type
Intronic
Target gene
UBASH3A
Nearest miRNA
hsa-let-7c/Upstream/691451; hsa-mir-5692b/Downstream/512636;
Nearest TSS
ENST00000624081/Upstream/34375; ENST00000454800/Downstream/57716;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/132086, chr21-CpG: 58/Downstream/57876
Upstream sequence
aggagcatgggtgacatgcgagagagcatgtcgcctccatggtgacaagggagagggcagagcacacagacacagatgcagcaggagggcaaatgtgggg
Downstream sequence
gacagggcttgcctcgactttctcagagacctaggaagtaaggccaccagcggaaagtgggggcagggactgtgggaagtttggggtgcgccgaaggaat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate