Basic Information
VIS ID
TVIS42000649
Fusion event
EBV-chr21 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
79068
Orient
-
Integrated sequence
AATGCAGTAATCTCCCCCGCTCGCCTTCGGTCCATTCCCAGAGTAAAACACGTACAGGATACTGTTATTGCCAAGAAATCGTGACACTGGACGTGGTGTC| |AGACGCAGGCTGTATGCATACCCTGTACCAGGTATTGGGGTGGCCACGGGACTCGTTGATGTGAGAATTCCGCCGCTGGGAACATGGCTCTCGTATCCAC
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
45274185/43854304 (Hg38)
End
45274185/43854304 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/244315; hsa-mir-6815/Downstream/1623962;
Nearest TSS
ENST00000624081/Upstream/41737; ENST00000474735/Downstream/10882;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/27695, chr21-CpG: 185/Downstream/9967
Nearby gene
MYL6P1(+1419) ;
Upstream sequence
gccctgattggaccggtgtccttgtaagaagagcagatgaggacagacacacacacagagggacagccctgtggggatacacggaggagtcggcgtctgc
Downstream sequence
atgccaaggagaggcctcagaggaaccagccctgctgacaccttgatcttggatgttcagcccccaggatgtcagaggatgcgtgtctgtggccgaggcc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate