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Viral Integration Site DataBase
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TVIS42000653
Basic Information
VIS ID
TVIS42000653
Fusion event
EBV-PPARA integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
2543
Orient
+
Integrated sequence
GCGCTGCGAGACACTTACTCGGGCCACTTGGTCCTTCAGCCCACGGAGACCCTTGACACATGGAAGGTGTTGAGCAGGGACACACGAACCGCTCATAGTT| |TGGAGCACGGATTCATTCATGCCGCGGGGACCATCCAGGCCAACTGCCCACAGCTGTTTATGAGACGCCAGCACCCCGGCCTCTTTCCCTTCGTTAATGC
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
46618346/46222449 (Hg38)
End
46618346/46222449 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22A
Target gene
PPARA
miRNAs that regulate target gene
hsa-mir-519d-3p
;
hsa-mir-22-3p
;
hsa-mir-10b-5p
;
hsa-mir-21-5p
;
hsa-mir-141-3p
;
hsa-mir-335-5p
;
hsa-mir-124-3p
;
hsa-mir-9-5p
;
hsa-mir-548d-5p
;
hsa-mir-19a-3p
;
hsa-mir-19b-3p
;
hsa-mir-519c-3p
;
hsa-mir-33a-5p
;
hsa-mir-130a-3p
;
hsa-mir-27a-5p
;
hsa-mir-4699-5p
;
hsa-mir-4662b
;
hsa-mir-4647
;
hsa-mir-4426
;
hsa-mir-6788-5p
;
hsa-mir-30c-2-3p
;
hsa-mir-5006-5p
;
hsa-mir-30c-1-3p
;
hsa-mir-6778-5p
;
hsa-mir-1233-5p
;
hsa-mir-8085
;
hsa-mir-6731-5p
;
hsa-mir-6878-5p
;
hsa-mir-6851-5p
;
hsa-mir-3689d
;
hsa-mir-6797-5p
;
hsa-mir-4755-3p
;
hsa-mir-1249-5p
;
hsa-mir-4459
;
hsa-mir-6757-5p
;
hsa-mir-4779
;
hsa-mir-6089
;
hsa-mir-129-5p
;
hsa-mir-608
;
hsa-mir-4651
;
hsa-mir-6766-5p
;
hsa-mir-6756-5p
;
hsa-mir-335-3p
;
hsa-mir-1305
;
hsa-mir-607
;
hsa-mir-4753-3p
;
hsa-mir-3671
;
hsa-mir-130b-5p
;
hsa-mir-5692a
;
hsa-mir-34a-5p
;
hsa-mir-9-3p
;
hsa-mir-130b-3p
;
hsa-mir-196b-5p
Nearest miRNA
hsa-let-7a-3/Upstream/108681; hsa-mir-12114/Downstream/2051915;
Nearest TSS
ENST00000624155/Upstream/45683;
ENST00000475467/Downstream/25836;
Nearest CpG islands
None/Target,
chr22-CpG: 279/Upstream/7557
,
chr22-CpG: 130/Downstream/27418
Nearest cancer related gene
PPARA
(TSG, No orient, 0)
Upstream sequence
ACAGGTTTAATTTGTATTAAATAGCTTGAAGCAATCCTTATTGGGAATTACAAGGTGGAATTTTAGTCACAGGAAAATAAAGCATTTCACAAGCTACTTA
Downstream sequence
CTTTCATGAACAAACCAAACCTCTTCTTTACTGAGTCCTTTAATTCTTCAGTGAATTCTCCAATTAAATAGGCCGAGACATTTTAGAAGTTTCCAGCAGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Sample Information
×
Sample name
Raji
Sample type
Cell line
Gender
Female
CpG Island Information
×
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