Basic Information
VIS ID
TVIS42000653
Fusion event
EBV-PPARA integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
2543
Orient
+
Integrated sequence
GCGCTGCGAGACACTTACTCGGGCCACTTGGTCCTTCAGCCCACGGAGACCCTTGACACATGGAAGGTGTTGAGCAGGGACACACGAACCGCTCATAGTT| |TGGAGCACGGATTCATTCATGCCGCGGGGACCATCCAGGCCAACTGCCCACAGCTGTTTATGAGACGCCAGCACCCCGGCCTCTTTCCCTTCGTTAATGC
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
End
46618346/46222449 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7a-3/Upstream/108681; hsa-mir-12114/Downstream/2051915;
Nearest cancer related gene
PPARA(TSG, No orient, 0)
Upstream sequence
ACAGGTTTAATTTGTATTAAATAGCTTGAAGCAATCCTTATTGGGAATTACAAGGTGGAATTTTAGTCACAGGAAAATAAAGCATTTCACAAGCTACTTA
Downstream sequence
CTTTCATGAACAAACCAAACCTCTTCTTTACTGAGTCCTTTAATTCTTCAGTGAATTCTCCAATTAAATAGGCCGAGACATTTTAGAAGTTTCCAGCAGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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