Basic Information
VIS ID
TVIS42000654
Fusion event
EBV-chr22 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
8449
Orient
+
Integrated sequence
TGGCCACTTGTCTTTGTTTATGGGCCCCATTGGCGTGGAGCCCCGTTTAATTTTCGGGGGTGTTAGAGACAACCAGTGGAGTCCGCTGCTGTCGGCGTCC| |ACTCTCTTTCCCCTTGTTACAAATAGAGTGTAACAACATGGTTCACCTGTCTTGGTCCCTGCCTGGGACACATCTTAATAACCCCAGTATCATATTGCAC
Host Sequence
Chromosome
chr22
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
48322032/47926283 (Hg38)
End
48322032/47926283 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA22A
Nearest miRNA
hsa-let-7a-3/Upstream/1812515; hsa-mir-12114/Downstream/348081;
Nearest TSS
ENST00000624155/Upstream/9555; ENST00000624219/Downstream/122266;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/712711, chr22-CpG: 25/Downstream/283062
Upstream sequence
ctcactgctaataaagacatacccacatttctgagactgggtaatttataaaggaaagcggtttaattgacttacagttccctatggctggggaggcctc
Downstream sequence
ataatcatggcagaaggcaaaggaggaacaaaggcagatcttaaatggaggcaggcaagaaaacttgtgcaggggaactcctctttataagagtatcaga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate