VISDB Viral Integration Site DataBase

VIS ID

TVIS42000655

Fusion event

EBV-CNTN4 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

118922

Orient

-

Integrated sequence

CTCCACACCCAATACTCTACTGAACCATCACATACATGACCTCCTCGAGGTATGCAGGGAATGAGCGGTCCGTGAGCCGGTCAACACGACATTGCTTCCG| |TTTCATGCCTCCAGCTGCCCCTGACCAGTTAGGACCCTTGACGGATGTCTTTAACGGCGCGGTGCAGTTGGTCACCAATGACGGCCTAAAGGCCAACACA

Chromosome

chr3

Cytoband

p26.3

Reference genome

Start

End

2163946/2122262 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4504 ; hsa-mir-661 ; hsa-mir-873-3p ; hsa-mir-6776-5p ; hsa-mir-6742-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-5586-3p

Nearest miRNA

hsa-let-7g/Downstream/3127915;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/22162, chr3-CpG: 95/Downstream/1004378

Upstream sequence

gtctcgatctcctgacttcgtgatccacctgtctcggcctcccaaagtgctgggattacaggtgtgagccaccgtgcccggcgataaggccctttttacc

Downstream sequence

GCTAACTCTTTTCCCTAGAGACAATGTTACTATTATTTGTTTATCATTTCAGAGATCTTTATTGTTATATGGGCACATATAACTGATTTTGTCAGTTAAA