VISDB Viral Integration Site DataBase

VIS ID

TVIS42000658

Fusion event

EBV-XPC integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

B-cell lymphoma (BL)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

67122

Orient

+

Integrated sequence

GCGGCCGCCGTCACCCTGCCGGAGAAGATTCTTGTGTTCCTGCTGATTGAAGGCATCTTCTTCATTAGCTCCTTCTACAGCATAGCCCTGCTGCGGGTCC| |GGGGCCTAATGCCTGGCATCTGCCTGGCCAATAACTACATAAGTAGGGATGAGCTGCTCCACACCCGCGCTGCCTCCCTGTTATACAATAGCATGACAGC

Chromosome

chr3

Cytoband

p25.1

Reference genome

Start

End

14196423/14154923 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-25-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1184 ; hsa-mir-1306-5p ; hsa-mir-3065-3p ; hsa-mir-3135b ; hsa-mir-3649 ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-4446-3p ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-483-5p ; hsa-mir-492 ; hsa-mir-5001-5p ; hsa-mir-505-5p ; hsa-mir-5193 ; hsa-mir-762 ; hsa-mir-331-3p ; hsa-mir-4453 ; hsa-mir-4538 ; hsa-mir-4732-3p ; hsa-mir-4750-3p ; hsa-mir-4757-5p ; hsa-mir-5196-3p ; hsa-mir-6744-3p ; hsa-mir-6801-3p ; hsa-mir-6810-3p ; hsa-mir-6846-3p ; hsa-mir-6859-3p ; hsa-mir-6878-3p

Nearest miRNA

hsa-mir-12127/Upstream/3760361; hsa-let-7g/Downstream/1341316;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/29424, chr3-CpG: 75/Downstream/23292

Upstream sequence

cttccacctgtggcaccctaagacagcaacaccaacctctcctcttactcctcctcagcctacccaacgtgaagatgacaaggatgaagacctttatgat

Downstream sequence

TAATGCTTCCTTCTGTCACTGACATGGTGCCTCTGGACGACGCCTGCATTCTCTTCCCAACAGGCTTTCTCCCGACTACCCGTACATACCCATAAGAGGA