Basic Information
VIS ID
TVIS42000660
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
161554
Orient
-
Integrated sequence
GCCCCGGGGGCCTGCAGCAGGTTCCTGTCCACGCCCCGGCCCATAAAGTATCCCAGGTTCCCGGCCTGGAATATCTGGTTGTTGCCGTTGACCCCCGTGT| |ACTTGTTGATGGTCACTGGCAGCGTGACAACCGGACGGGCCTTGCAGACCTGGCTAAGACAGTCTGTGGCCGCGCAGACCACCGTGGTCGCAGTAAGGGA
Host Sequence
Chromosome
chr3
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
23757613/23716122 (Hg38)
End
23757613/23716122 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/3578481; hsa-let-7g/Downstream/1948751;
Nearest TSS
ENST00000440867/Upstream/216516; ENST00000484048/Downstream/89781;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/512565, chr3-CpG: 66/Downstream/90079
Upstream sequence
TTTCACAAGATGGTATATGGTTTTACCTTTGCACAACCCATTATTTTATGAAGCAGTATTATCAGTAAAGAAATATGATTACTACGAAACCACACTGTGA
Downstream sequence
tctctcttctgttccatatatctgtgtattctttggccaataccacactgtcttgattactacaactttatagtagttcttgaagtcaggtagtgtcagt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate