Basic Information
VIS ID
TVIS42000661
Fusion event
EBV-UBE2E1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
44618
Orient
+
Integrated sequence
CTTCACGCTATGCGCCGAGGCCTTTGAGGCCGTGTAGTTTCTGTGGTGCGGATGCATTAGGCGGCGCAATGCGGGATCTGCCGGTCGCTGTTGGCGTGCA| |TTCACGGCATCTGGGGTGACCGGGGCCATCGGGTTTACTTTTCACACGTAGACCTGGGAAGTTTGATAGGACTGTACCAGGTCAAGGCCGTGGATGCGCA
Host Sequence
Chromosome
chr3
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
23847773/23806282 (Hg38)
End
23847773/23806282 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBE2E1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-5692a ; hsa-mir-6507-5p
Nearest miRNA
hsa-mir-12127/Upstream/3668641; hsa-let-7g/Downstream/1858591;
Nearest TSS
ENST00000440867/Upstream/298; ENST00000442670/Downstream/623;
Nearest CpG islands
chr3-CpG: 66/Target, None/Upstream, None/Downstream
Upstream sequence
GGGCCATTGGCAGCCTACTTTCATTTTTTTTTTCTTAAATGGCAACTCCATAACTTTTCTGCCCTTAAATCTGTCAATTTCATAGAGACAACTCTGATTT
Downstream sequence
ccccgggccgcgtggggtgcgggggccgcccgcATTGAGGACGGGGGTCATTGTGGCTCGAACTGTCAGCGCTGCCCCAAGAGCCCCCCACTGGCCACCG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate