Basic Information
VIS ID
TVIS42000666
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
153503
Orient
+
Integrated sequence
TCGGCCATCTCCGTCTTTCTCGCCCCCTTCACTCCCCCCTTGGGCTCCACAAAGACGTACTGGATGCGGTCGTGGATCTGGGGCAGTTCCTCGTTGCGCT| |CGACGAACTTCTGGTAGACGGCCAGGTGAGGCATCTGGGTGCTCTTGTAGGCTGAGAGCTTGCGGCTGAGCTCCGTTGAAAAGCAGAGCTCCCCCATGGG
Host Sequence
Chromosome
chr3
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
64923387/64937712 (Hg38)
End
64923387/64937712 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADAMTS9-AS2 ; MIR548A2
Nearest miRNA
hsa-let-7g/Upstream/4319842; hsa-mir-12124/Downstream/2287752;
Nearest TSS
ENST00000440867/Upstream/249712; ENST00000481004/Downstream/237246;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/249431, chr3-CpG: 63/Downstream/418816
Nearest cancer related gene
ADAMTS9-AS2(TSG, No orient, 0)
Upstream sequence
CAACAGCTCCTCTTACCACTGCCCCCACCTTATTTGCAGGTGGCTAAGTACAATCGGAACAAGTAGGTATCATAAGATTTAGTCCAGAGTCAATTTGAGA
Downstream sequence
tcttcccttctcttcccatagtgaaatggggtgatcatggctgacttcagcctcaaccttctgagttcaagccacctttccacctcagcctgattagcag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate