Basic Information
VIS ID
TVIS42000667
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
132655
Orient
-
Integrated sequence
CCTGGAAATCCAGCCATGGATCCCACCCGGGGTCTGTGTGCCCTCTCCACACACGACCTGGCAAAATTTCACAGTCTTCCCCCGGCTAGAAAGGCGGCAG| |GTAAGCGAGCGCACCTTCGGTGTTACTCCAAGCTGCTCTCTCTTAAGAGCTGGGAGCAACTGGCCTCTTTTTTGTCTCTGCCCCCGGGACCCACGTTTAC
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
78163101/78113950 (Hg38)
End
78163101/78113950 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/2375587; hsa-mir-12124/Downstream/1393937;
Nearest TSS
ENST00000440867/Upstream/26546; ENST00000484679/Downstream/152990;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1015702, chr3-CpG: 49/Downstream/904963
Nearby gene
RN7SL647P(+1208) ;
Upstream sequence
ctccaaatAGACCCAGCACAAAGGCCaaaaatgtaattgatatactttgcctaacagataaatattgcactctggaacttcagagaatatatctttacgg
Downstream sequence
AGACCAGAACTGAATGCTACAATAGAAAAGAGGTTTCAATAACCATTCTCAATTTGTTTCCTTTTTCTTTTCCTTATGAAAATCCTAGTAACTAGTATTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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