Basic Information
VIS ID
TVIS42000669
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
157666
Orient
+
Integrated sequence
TCCCGCCTCCGACGCCTCAGAACGGCGGCGGGGGTGCTCCCGCGGGCCGCGGATGGGGCTGGGGGCGATGGACTGCTGGGGGGTGAGGAAGTCGGAGTGG| |TAAGCTCCGTCAGGTTCTTGACGGTGGCCAACGAGCGCGGGGTCAGAGGTAGCCAAGCTAATAACAATCCTCCGCTCGTTATAAAATATGTAATGGCTTC
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
96513376/96794532 (Hg38)
End
96513376/96794532 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/434493; hsa-mir-12124/Downstream/3169782;
Nearest TSS
ENST00000440867/Upstream/176296; ENST00000506569/Downstream/20049;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/17394, chr3-CpG: 174/Downstream/18647
Upstream sequence
GGGACACtttttagactaaggtacagagagggggatcccaagcacaatacagtcatctcactattggagttcaagaaggtgatttggaattggcagggca
Downstream sequence
caggacaaccctctgtgtcctgagaagtgtgtgctggtattggtagtggctgtgatggactggatgggccagtttccagactcacaggtggcatgtgcaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate