Basic Information
VIS ID
TVIS42000670
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
86279
Orient
+
Integrated sequence
GGCCGGGGCCTCCATCCAGTGGGGCTTCTGAGAGATTGGTACCAGAAGAGTCATACTCAAGAGATCAGCAACCTTGGGGGCAAAGCAGGGGTGATGAAAA| |CAGAGGCTGGATGCAGCGCATCAGGCGAAGGCGGAGAAGACGGGCTGCCTTGTCCGGCCATCTTTTAGACACGGAAGACAATGTGCCGCCATGGTTGCCT
Host Sequence
Chromosome
chr3
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
103252170/103533326 (Hg38)
End
103252170/103533326 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/9210; hsa-mir-12124/Downstream/6069502;
Nearest TSS
ENST00000440867/Upstream/859413; ENST00000470756/Downstream/1833583;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1683124, chr3-CpG: 32/Downstream/1820359
Nearby gene
MIR548AB(-9210) ; LOC644681(+5248) ;
Upstream sequence
caggcaagagaaagaaataaaaggcatccagagaggaagtcaaactatccctgtttgaagatgacatgattctatacctagaaaaccccatagtctctgc
Downstream sequence
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaacagaggaagaagaaggaaaaaaaaaGGAATAGCGTAACTGATTAATGGGATATATTAGGTGAGGAAAAGC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate