Basic Information
VIS ID
TVIS42000671
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
116702
Orient
+
Integrated sequence
AACACGGAGGCCATGCTCTCAGGTAACGGGAGATGGAACTCCAGCTTACTATACGAGCACAGGTGGCGAGGATTGGGCTCATCCGTGCCCCCCTCCCCCC| |GCGGGAGGCTCAATCGGCCTTGGTCTGACATTCCACCCCGGCCAGGTCCAGGAGGGTGCAAATATTCTCCAGGCGCTGCACCTCAGAGACCTCCTGCTCA
Host Sequence
Chromosome
chr3
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
109286934/109568087 (Hg38)
End
109286934/109568087 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/6043971; hsa-mir-12124/Downstream/34741;
Nearest TSS
ENST00000440867/Upstream/157925; ENST00000485384/Downstream/80020;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/449845, chr3-CpG: 105/Downstream/1503215
Upstream sequence
tcttgatttatctgatttgctagtctgtgtcttttaattggggcatttagcccatttacatttaaggctaatattcttatgtgtgaatttgatcctgtca
Downstream sequence
catgacataaatgttaaaacttttgttatagtcccaaaggtctctgtttttctttctgttttctctctgttgatcagattggttcatttccattgtttat
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate