Basic Information
VIS ID
TVIS42000673
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
100399
Orient
-
Integrated sequence
GTTCGCCCAGCTCCATCCCAGCAGTCACCTCCGGATCCCACGTACGCCCGGGCAGGGGCACAGCACCAAGCTCCGCCACGTATTCCCCGTTTTCACAGAG| |AGAATGTCCTCCGTGGCTAAAAGCGTAGATGCCTCCGTAGATGAGTCGGGCCAGGAAGCTGTAGACATACTCGGGCTGCTCATGCCCGTGGGCCTCCACG
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
129854913/130136070 (Hg38)
End
129854913/130136070 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/863827; hsa-mir-1224/Downstream/1849785;
Nearest TSS
ENST00000440867/Upstream/23418; ENST00000512482/Downstream/209446;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/23487, chr3-CpG: 31/Downstream/127832
Nearby gene
LOC105374103(+7211) ;
Upstream sequence
gacacacaatgctttctaaagactggtattacattctgtttatgtgaaggaaacgcattttcaataaaattaattattgtaaaaAAAAAATGCATGTTGT
Downstream sequence
AGAAATTACTTTAGTGGTATGAAAAGAAACCATGCTATTTAGTCAGAATACTTCTGAGAGTATCCCCTGTCCAAGCATTTGCTGAATTTCTATGTACTAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate