Basic Information
VIS ID
TVIS42000674
Fusion event
EBV-LOC339874 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
136793
Orient
-
Integrated sequence
CCCGCGGGCGGGGACCCGGGTGCCTTCTTGGCGATGGACGCTCACACCTACCACCCCCACCCACACCCCCCTCCGGCCTACTTTGGCTTGCCGGGCCTCT| |TTGGCCCCCCTCCACCCGTGCCTCCTTACTACGGATCCCACTTGCGGGCAGACTACGTCCCCGCTCCCTCGCGATCCAACAAGCGGAAAAGAGACCCCGA
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
131093304/131374460 (Hg38)
End
131093304/131374460 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC339874
Nearest miRNA
hsa-let-7g/Upstream/2102217; hsa-mir-1224/Downstream/611395;
Nearest TSS
ENST00000440867/Upstream/209183; ENST00000502852/Downstream/7211;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/12113, chr3-CpG: 76/Downstream/7037
Upstream sequence
acagagtgctgattgatgcgtttacaagtttacaattcctgagctagacacagagttctgattggtgcatccacgaaccacccccccccccccccccccc
Downstream sequence
gctcaggaagcatttaccaaattagccatatattggaccttatcaaacctcagcaaatctTCTCGAATCTTCTAGTCCCTCTCAGAAATCATAGATCACA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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