Basic Information
VIS ID
TVIS42000675
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
91444
Orient
+
Integrated sequence
CTTCACGGCCTGACTGGTTTCTTCATCAGGGTCCTCCAACAGATGACTTGCCTCGGGGGTTACTGCGGGGGCCGGGTCAAGTGGCTGGGGCACCGGGGCT| |GGCGTTAGGGATCCGACCGGTTCATGGACAGGTCCTGTGGGGGTGGGAGCCAAAGAGGCAGGCAGGGGCCGGTTGGCCCACGGGGATCCGGGTGGATGGA
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
142019876/142301034 (Hg38)
End
142019876/142301034 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/7863128; hsa-mir-1224/Downstream/9264842;
Nearest TSS
ENST00000440867/Upstream/75427; ENST00000483373/Downstream/31856;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/75356, chr3-CpG: 71/Downstream/146326
Nearby gene
XRN1(+5573) ;
Upstream sequence
TCTAGGAAAATGAGCGTGTGTGTGTGTGTgagagagagagagagagacagagagagacagagagagagagataggaatggggagagaaagagagaCTGAC
Downstream sequence
tataaaacaattactactagatctaagaaatgagacagacagaaacacagtaacagtgggggacctcaatactccactgacagcactagacaggttatca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate