Basic Information
VIS ID
TVIS42000676
Fusion event
EBV-chr3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64221
Orient
+
Integrated sequence
GCAACGACCAGTCATGTCGAGCATGAGCTCCTCTCCAAATTGATTGATGAGTTAAAGGTCAAGGCCAACTCAGACCCCGAGGCTGATGTCCTGGCCGGGC| |GCCTGCTCCACCGCCTTAAGGCCGAGTCAGTTACACACACAGTAGCCGAATATCTGGAGGTCTTCTCTGACAAATTCTACGATGAGGAATTCTTCCAGAT
Host Sequence
Chromosome
chr3
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
150356356/150638569 (Hg38)
End
150356356/150638569 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3D
Nearest miRNA
hsa-let-7g/Upstream/16200663; hsa-mir-1224/Downstream/927307;
Nearest TSS
ENST00000440867/Upstream/11658; ENST00000471093/Downstream/43750;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/26628, chr3-CpG: 53/Downstream/64827
Nearby gene
SELENOT(-8122) ;
Upstream sequence
GGCAGGGAGGGGCCGAGGGCCCAAGAGATTTTGTTGCCCTGTCTTAAATAGGGGGGAAACTGAGGCTAAAGTTGTTTCCCACTGAACTGCTAGTCCTGAG
Downstream sequence
gacaactgtagagaacagagctatgcagagaaggaactccagaagtccacacaggAGTTTGCGTATTGCTGAAATTCCATGAGCTAGGcacactttgccc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate