Basic Information
VIS ID
TVIS42000677
Fusion event
EBV-LOC101928236 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81047
Orient
+
Integrated sequence
TAGTATCCAAACACCGTGGATCGATGACAATCCTAGCACGGAGACGGCACAGGCTTGGAATGCCGGCTTTCTCCGGGGTCGTGCGTATGGGATAGACTTG| |CTTAGAACTGAAGGGGAACATGTCGAAGGTGCTACCGGTGAAACGCGAGAAGAAAGTGAGGACACGGAGAGCGATGGAGATGATGAAGATCTTCCTTGTA
Host Sequence
Chromosome
chr3
Cytoband
q25.31
Reference genome
GRCh37/hg19
Start
156912613/157194824 (Hg38)
End
156912613/157194824 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
LOC101928236
Nearest miRNA
hsa-let-7g/Upstream/5628829; hsa-mir-1224/Downstream/2087822;
Nearest TSS
ENST00000440867/Upstream/31372; ENST00000295927/Downstream/169657;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/19577, chr3-CpG: 59/Downstream/242654
Upstream sequence
CTCATCACACATTTACTTCAATTTGCTTTATGGGCTTTCATAGGATTATAGTATCAATACCCtttaaaaaagggaatcaacttaattctcaaatttggga
Downstream sequence
ccaaaagctcctagatctgataaacaacttcagcaaagtttctggatacaaaattaacatacaaaaatcagtaacattccaatacaccaacaacatccaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate