Basic Information
VIS ID
TVIS42000678
Fusion event
EBV-NCEH1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
B-cell lymphoma (BL)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148806
Orient
+
Integrated sequence
TTCGCCCTCTGGGGATGAGATGTTCAGGGGTGGCCGGTACCCTACGCTGCCGATTTACATAATATAAATTGTAAATGCTGCAGTAGTAGGGATCTGGACG| |CGCGACCTGCTACTCTTCGGAAACGCCAACCCAGGAGCGTCGCCTCTGGCCCCATACTCCCGCCATGCGACTGCTCGCCCCCTCCCAGGCCTCCCTGGTG
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
172381788/172663998 (Hg38)
End
172381788/172663998 (Hg38)
Orient
-
Location type
Intronic
Target gene
NCEH1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-mir-361-5p ; hsa-mir-215-5p ; hsa-mir-7-5p ; hsa-mir-192-5p ; hsa-mir-744-5p ; hsa-mir-2110 ; hsa-mir-192-3p ; hsa-mir-4314 ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4668-5p ; hsa-mir-4271 ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-3184-5p ; hsa-mir-3188 ; hsa-mir-330-3p ; hsa-mir-335-5p ; hsa-mir-3665 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3934-5p ; hsa-mir-423-5p ; hsa-mir-4266 ; hsa-mir-4283 ; hsa-mir-4695-5p ; hsa-mir-4728-5p ; hsa-mir-4779 ; hsa-mir-5697 ; hsa-mir-6085 ; hsa-mir-6716-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6783-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6813-5p ; hsa-mir-6815-3p ; hsa-mir-6871-5p ; hsa-mir-6873-5p ; hsa-mir-6883-5p ; hsa-mir-6893-5p ; hsa-mir-7106-5p ; hsa-mir-766-5p ; hsa-mir-8065
Nearest miRNA
hsa-let-7g/Upstream/1557239; hsa-mir-1224/Downstream/2705542;
Nearest TSS
ENST00000440867/Upstream/27814; ENST00000366254/Downstream/47054;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/213922, chr3-CpG: 39/Downstream/46628
Upstream sequence
ATCAGGAATGAACTCACTCCAGTAAACCCACCTGTGACTGCCAACCTATCAGTACTAGTAGTATTTGAATCAAATGGATCTCCAAGTTACCTGAATTCAT
Downstream sequence
ttatgatattagctggttattttgctcgttagttgatgcagtttcttcctagcctcgatggtctttacaatttggcatgtttttgcagtggctggtacca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate